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News05/06/2026

3 common mistakes transport companies make when submitting VAT refund applications on their own

Fuel and tolls expenses – these often carry high VAT rates, recoverable only if the correct procedures are followed. Still, many transport companies attempt submit claims by themselves despite having limited knowledge, which leads to delays or rejections without warning.

Often, errors in documentation appear, together with misunderstandings of country specific rules or missed deadlines. Although it is governed by EU legislation, individual European Union Member State processes them according to its own national procedures. As a result, even small mistakes can significantly delay refund process.

VAT refund in international transport: why mistakes are costly?

VAT is applied to goods and services at each stage of production and distribution. Because consumers bear the cost, companies can recover part of this tax under certain conditions while operating abroad. For Lithuanian haulage businesses transporting cargo internationally, claiming VAT refunds from other EU countries is a common practise.

However, reclaiming VAT is complex process. Cross-border refund procedures involve strict deadlines, documentation requirements, minimum claim amounts, and interpretive guidelines, even within a framework designed to ensure consistency across member states.

When transport companies manage VAT claims by themselves without professional guidance, errors appear. These mistakes can delay paybacks and increase administrative burden. As a result, VAT funds may remain inaccessible for the period of one month to over eight months. During this time, significant sums cannot be used to support daily business operations. 

On the other hand, under strict regulations, even a single error can result not only in delays, but also in a fully rejected application, often with no opportunity to correct it after submission.

Mistake 1: Claiming VAT on non-eligible expenses

Transport companies sometimes claim VAT refunds on expenses that are not eligible for recovery in the country where the fee was originated. 

Business-related expenses such as fuel or toll payments are often refundable. However, regulations differ by country, each defines eligible costs differently. What qualifies for a refund in one country may not be accepted in another.

Common examples of non-eligible claims include:

  • Personal expenses mistakenly included in business costs
  • Representation or hospitality expenses
  • Certain services that are excluded from reimbursement under national procedures

In such cases, tax authorities complete rejection of the VAT refund application.

Mistake 2: Commercial activity in the refunding country

Some transport companies overlook the fact that reclaiming VAT while running commercial activities in the refunding country can eliminate their refund eligibility. Due to EU regulations, having a business presence in that country invalidate claims without exception. A recovery attempt fails only because of local operational links.

Any company operating in the refunding country – whether present via a permanent location, representatives, or ongoing commercial activity – falls outside the standard VAT recovery system. Local regulations then determine applicable tax duties instead.

Common reason why companies make this mistake – misunderstanding what qualifies as commercial activity.

Often, the mistake becomes apparent after the VAT submission has already been processed. As a result, transport companies lose time, face rejected applications and no refund at all. By properly evaluating business activity and eligibility before submission, companies can avoid rejections and prevent financial losses. 

Mistake 3: Lacking enough experience

While some companies decide to manage VAT refund applications on their own, few fully understand the requirements in each country. Although eliminating third-party support may seem cost-effective at first, it often leads to delayed responses, rejected applications, and increased administrative workload. 

Beyond mere formality, understanding VAT refund steps becomes necessary for full and correct application complexity:

  • Submission deadlines
  • Minimum refund amounts
  • Technical requirements for electronic submissions
  • Handling questions from tax authorities, which require careful review and timely, accurate responses

Common reasons why companies make this error:

  • Underestimating the complexity of VAT refund processes
  • Limited experience with foreign tax authorities

Self-managed VAT refund applications often result in unexpected delays. Errors in forms can slow down the process, especially when responses to tax authority inquiries are incomplete or submitted late. Incorrect documentation may result in delays or rejections. As a result, staff must spend additional time resolving issues that could have been avoided.

What causes certain VAT refunds take much longer than expected?

VAT refund delays are often caused by errors in the application process or failure to meet strict regulatory requirements. Submissions that arrive after the deadline are rejected immediately by tax authorities. Similarly, claims that do not meet the minimum refund amounts are typically denied – corrections afterward rarely gain approval.

Mistakes tend to delay VAT refund processes for transportation companies. Based on the most common mistakes identified in VAT refund applications, transport companies can significantly reduce processing times and avoid unnecessary rejections by working with experienced VAT refund providers.

Edenred Finance supports transport companies

  • Our expertise covers national VAT procedures across Europe, including country-specific conditions, eligibility rules, and regional interpretations that affect what qualifies for a refund.
  • Our expert teams combine automated systems with thorough review processes to ensure accurate and timely submissions. 
  • VAT and legal professionals handle requests from tax authorities. Their in-depth understanding of regulatory requirements ensures clear, accurate responses and timely handling all requests. 

When VAT refunds are managed by an experienced provider, cash flow becomes more predictable for transport companies. As a result, refunds are processed smoothly and remain fully protected. 

Why choose Edenred Finance for VAT refunds?

Recovering VAT through Edenred Finance is simple and efficient. For those who are not willing to wait for standard timelines, companies can receive prepaid refunds within two days when all required documentation is submitted correctly. Each method leads toward better VAT refunds and improved cash flow when procedures become more efficient.

Edenred Finance handles the entire VAT refund process – from document validation and submission to communication with tax authorities and final payment. This allows transport companies to stay focused on their operations, with confidence that their VAT refunds are handled reliably. 

Businesses benefit from:

  • Full VAT recovery according to eligibility rules
  • Time savings and reduced internal workload
  • Efficient and professional service
  • Clear answers to all VAT related questions
  • Financial advantages and prepaid refunds

Starting a conversation with Edenred Finance is possible through the registration form - https://finance.edenred.com/en/become-client, by calling +370 628 11111, or via email at sales@finance.edenred.com.